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Biblio

Found 19 results

2019
Howe, KL, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, Alvarez-Jarreta J, Barba M, Bolser DM, Cambell L et al..  2019.  Ensembl Genomes 2020-enabling non-vertebrate genomic research.. Nucleic acids research. Abstract
2018
Tello-Ruiz, MK, Naithani S, Stein JC, Gupta P, Campbell M, Olson A, Wei S, Preece J, Geniza MJ, Jiao Y et al..  2018.  Gramene 2018: unifying comparative genomics and pathway resources for plant research.. Nucleic acids research. 46(D1):D1181-D1189. Abstract
Harper, L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C et al..  2018.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.. Database : the journal of biological databases and curation. 2018 Abstract
Naithani, S, Preece J, D'Eustachio P, Gupta P, Amarasinghe V, Dharmawardhana PD, Wu G, Fabregat A, Elser JL, Weiser J et al..  2018.  Plant Reactome: a resource for plant pathways and comparative analysis.. Nucleic acids research. 45(D1):D1029-D1039. Abstract
2016
Gupta, P, Naithani S, Tello-Ruiz MK, Chougule K, D'Eustachio P, Fabregat A, Jiao Y, Keays M, Lee YK, Kumari S et al..  2016.  Gramene Database: Navigating Plant Comparative Genomics Resources.. Current plant biology. 7-8:10-15. Abstract
Tello-Ruiz, MK, Stein J, Wei S, Preece J, Olson A, Naithani S, Amarasinghe V, Dharmawardhana P, Jiao Y, Mulvaney J et al..  2016.  Gramene 2016: comparative plant genomics and pathway resources.. Nucleic acids research. 44(D1):D1133-40. Abstract
Tello-Ruiz, MK, Stein J, Wei S, Youens-Clark K, Jaiswal P, Ware D.  2016.  Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.. Methods in molecular biology (Clifton, N.J.). 1374:141-63. Abstract
2014
Monaco, MK, Stein J, Naithani S, Wei S, Dharmawardhana P, Kumari S, Amarasinghe V, Youens-Clark K, Thomason J, Preece J et al..  2014.  Gramene 2013: comparative plant genomics resources.. Nucleic acids research. 42(Database issue):D1193-9. Abstract
2013
Dharmawardhana, P, Ren L, Amarasinghe V, Monaco M, Thomason J, Ravenscroft D, McCouch S, Ware D, Jaiswal P.  2013.  A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress. Rice. 6 Abstract
Monaco, MK, Sen TZ, Dharmawardhana PD, Ren L, Schaeffer M, Naithani S, Amarasinghe V, Thomason J, Harper L, Gardiner J et al..  2013.  Maize Metabolic Network Construction and Transcriptome Analysis. The Plant Genome. 6(1):1-12. Abstract
2011
Youens-Clark, K, Buckler E, Casstevens T, Chen C, Declerck G, Derwent P, Dharmawardhana P, Jaiswal P, Kersey P, Karthikeyan AS et al..  2011.  Gramene database in 2010: updates and extensions.. Nucleic acids research. 39(Database issue):D1085-94. Abstract
2009
Ni, J, Pujar A, Youens-Clark K, Yap I, Jaiswal P, Tecle I, Tung C-W, Ren L, Spooner W, Wei X et al..  2009.  Gramene QTL database: development, content and applications.. Database : the journal of biological databases and curation. 2009:bap005. Abstract
2008
Liang, C, Jaiswal P, Hebbard C, Avraham S, Buckler ES, Casstevens T, Hurwitz B, McCouch S, Ni J, Pujar A et al..  2008.  Gramene: a growing plant comparative genomics resource.. Nucleic acids research. 36(Database issue):D947-53. Abstract
Avraham, S, Tung C-W, Ilic K, Jaiswal P, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM et al..  2008.  The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.. Nucleic acids research. 36(Database issue):D449-54. Abstract
2006
Pujar, A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY et al..  2006.  Whole-plant growth stage ontology for angiosperms and its application in plant biology.. Plant physiology. 142(2):414-28. Abstract
Jaiswal, P, Ni J, Yap I, Ware D, Spooner W, Youens-Clark K, Ren L, Liang C, Zhao W, Ratnapu K et al..  2006.  Gramene: a bird's eye view of cereal genomes.. Nucleic acids research. 34(Database issue):D717-23. Abstract
2005
Jaiswal, P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M et al..  2005.  Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.. Comparative and functional genomics. 6(7-8):388-97. Abstract
2002
Ware, D, Jaiswal P, Ni J, Pan X, Chang K, Clark K, Teytelman L, Schmidt S, Zhao W, Cartinhour S et al..  2002.  Gramene: a resource for comparative grass genomics.. Nucleic acids research. 30(1):103-5. Abstract
Jaiswal, P, Ware D, Ni J, Chang K, Zhao W, Schmidt S, Pan X, Clark K, Teytelman L, Cartinhour S et al..  2002.  Gramene: development and integration of trait and gene ontologies for rice.. Comparative and functional genomics. 3(2):132-6. Abstract