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2022
A. D. Yates
,
Allen, J.
,
Amode, R. M.
,
Azov, A. G.
,
Barba, M.
,
Becerra, A.
,
Bhai, J.
,
Campbell, L. I.
,
Martinez, M. Carbajo
,
Chakiachvili, M.
,
Chougule, K.
,
Christensen, M.
,
Contreras-Moreira, B.
,
Cuzick, A.
,
Fioretto, L. Da Rin
,
Davis, P.
,
De Silva, N. H.
,
Diamantakis, S.
,
Dyer, S.
,
Elser, J.
,
Filippi, C. V.
,
Gall, A.
,
Grigoriadis, D.
,
Guijarro-Clarke, C.
,
Gupta, P.
,
Hammond-Kosack, K. E.
,
Howe, K. L.
,
Jaiswal, P.
,
Kaikala, V.
,
Kumar, V.
,
Kumari, S.
,
Langridge, N.
,
Le, T.
,
Luypaert, M.
,
Maslen, G. L.
,
Maurel, T.
,
Moore, B.
,
Muffato, M.
,
Mushtaq, A.
,
Naamati, G.
,
Naithani, S.
,
Olson, A.
,
Parker, A.
,
Paulini, M.
,
Pedro, H.
,
Perry, E.
,
Preece, J.
,
Quinton-Tulloch, M.
,
Rodgers, F.
,
Rosello, M.
,
Ruffier, M.
,
Seager, J.
,
Sitnik, V.
,
Szpak, M.
,
Tate, J.
,
Tello-Ruiz, M. K.
,
Trevanion, S. J.
,
Urban, M.
,
Ware, D.
,
Wei, S.
,
Williams, G.
,
Winterbottom, A.
,
Zarowiecki, M.
,
Finn, R. D.
, and
Flicek, P.
,
“
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
”
,
Nucleic Acids Res
, vol. 50, no. D1, pp. D996-D1003, 2022.
2021
“
The Gene Ontology resource: enriching a GOld mine.
”
,
Nucleic Acids Res
, vol. 49, no. D1, pp. D325-D334, 2021.
M. K. Tello-Ruiz
,
Naithani, S.
,
Gupta, P.
,
Olson, A.
,
Wei, S.
,
Preece, J.
,
Jiao, Y.
,
Wang, B.
,
Chougule, K.
,
Garg, P.
,
Elser, J.
,
Kumari, S.
,
Kumar, V.
,
Contreras-Moreira, B.
,
Naamati, G.
,
George, N.
,
Cook, J.
,
Bolser, D.
,
D'Eustachio, P.
,
Stein, L. D.
,
Gupta, A.
,
Xu, W.
,
Regala, J.
,
Papatheodorou, I.
,
Kersey, P. J.
,
Flicek, P.
,
Taylor, C.
,
Jaiswal, P.
, and
Ware, D.
,
“
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.
”
,
Nucleic Acids Res
, vol. 49, no. D1, pp. D1452-D1463, 2021.
2011
S. Smita
,
Lenka, S. K.
,
Katiyar, A.
,
Jaiswal, P.
,
Preece, J.
, and
Bansal, K. C.
,
“
QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.
”
,
Database : the journal of biological databases and curation
, vol. 2011, p. bar037, 2011.
2010
“
The Gene Ontology in 2010: extensions and refinements.
”
,
Nucleic acids research
, vol. 38, no. Database issue, pp. D331-5, 2010.
2008
C. Liang
,
Jaiswal, P.
,
Hebbard, C.
,
Avraham, S.
,
Buckler, E. S.
,
Casstevens, T.
,
Hurwitz, B.
,
McCouch, S.
,
Ni, J.
,
Pujar, A.
,
Ravenscroft, D.
,
Ren, L.
,
Spooner, W.
,
Tecle, I.
,
Thomason, J.
,
Tung, C. - W.
,
Wei, X.
,
Yap, I.
,
Youens-Clark, K.
,
Ware, D.
, and
Stein, L.
,
“
Gramene: a growing plant comparative genomics resource.
”
,
Nucleic acids research
, vol. 36, no. Database issue, pp. D947-53, 2008.
S. Avraham
,
Tung, C. - W.
,
Ilic, K.
,
Jaiswal, P.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Zapata, F.
, and
Ware, D.
,
“
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
”
,
Nucleic acids research
, vol. 36, no. Database issue, pp. D449-54, 2008.
2006
P. Jaiswal
,
Ni, J.
,
Yap, I.
,
Ware, D.
,
Spooner, W.
,
Youens-Clark, K.
,
Ren, L.
,
Liang, C.
,
Zhao, W.
,
Ratnapu, K.
,
Faga, B.
,
Canaran, P.
,
Fogleman, M.
,
Hebbard, C.
,
Avraham, S.
,
Schmidt, S.
,
Casstevens, T. M.
,
Buckler, E. S.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene: a bird's eye view of cereal genomes.
”
,
Nucleic acids research
, vol. 34, no. Database issue, pp. D717-23, 2006.
2002
D. Ware
,
Jaiswal, P.
,
Ni, J.
,
Pan, X.
,
Chang, K.
,
Clark, K.
,
Teytelman, L.
,
Schmidt, S.
,
Zhao, W.
,
Cartinhour, S.
,
McCouch, S.
, and
Stein, L.
,
“
Gramene: a resource for comparative grass genomics.
”
,
Nucleic acids research
, vol. 30, no. 1, pp. 103-5, 2002.
D. H. Ware
,
Jaiswal, P.
,
Ni, J.
,
Yap, I. V.
,
Pan, X.
,
Clark, K. Y.
,
Teytelman, L.
,
Schmidt, S. C.
,
Zhao, W.
,
Chang, K.
,
Cartinhour, S.
,
Stein, L. D.
, and
McCouch, S. R.
,
“
Gramene, a tool for grass genomics.
”
,
Plant physiology
, vol. 130, no. 4, pp. 1606-13, 2002.
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