Jaiswal Lab

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Biblio

Found 68 results
2015
S. A. Filichkin, Cumbie, J. S., Dharmawardhana, P., Jaiswal, P., Chang, J. H., Palusa, S. G., Reddy, A. S. N., Megraw, M., and Mockler, T. C., Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis., Molecular plant, vol. 8, no. 2, pp. 207-27, 2015.
A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., Finding Our Way through Phenotypes, PLoS Biol, vol. 13, p. e1002033, 2015.
A. Oellrich, Walls, R. L., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G. V., Harper, L., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S. R., Lloyd, J. P., Meinke, D., Menda, N., Moore, L., Nelson, R. T., Pujar, A., Lawrence, C. J., and Huala, E., An ontology approach to comparative phenomics in plants., Plant methods, vol. 11, p. 10, 2015.
R. C. Graebner, Wise, M., Cuesta-Marcos, A., Geniza, M., Blake, T., Blake, V. C., Butler, J., Chao, S., Hole, D. J., Horsley, R., Jaiswal, P., Obert, D., Smith, K. P., Ullrich, S., and Hayes, P. M., Quantitative Trait Loci Associated with the Tocochromanol (Vitamin E) Pathway in Barley., PloS one, vol. 10, no. 7, p. e0133767, 2015.
2014
N. Lingutla, Preece, J., Todorovic, S., Cooper, L., Moore, L., and Jaiswal, P., AISO: Annotation of Image Segments with Ontologies, Journal of Biomedical Semantics, vol. 5, p. 50, 2014.
S. Schaeffer, Harper, A., Raja, R., Jaiswal, P., and Dhingra, A., Comparative analysis of predicted plastid-targeted proteomes of sequenced higher plant genomes., PloS one, vol. 9, no. 11, p. e112870, 2014.
S. E. Fox, Geniza, M., Hanumappa, M., Naithani, S., Sullivan, C. M., Preece, J., Tiwari, V. I. K., Elser, J., Leonard, J. M., Sage, A., Gresham, C., Kerhornou, A., Bolser, D., McCarthy, F., Kersey, P., Lazo, G. R., and Jaiswal, P., De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum., PLoS ONE, vol. 9, no. 5, 2014.
K. J. Vining, Romanel, E., Jones, R. C., Klocko, A., Alves-Ferreira, M., Hefer, C. A., Amarasinghe, V., Dharmawardhana, P., Naithani, S., Ranik, M., Wesley-Smith, J., Solomon, L., Jaiswal, P., Myburg, A. A., and Strauss, S. H., The floral transcriptome of Eucalyptus grandis., The New phytologist, 2014.
A. A. Myburg, Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., Jenkins, J., Lindquist, E., Tice, H., Bauer, D., Goodstein, D. M., Dubchak, I., Poliakov, A., Mizrachi, E., Kullan, A. R. K., Hussey, S. G., Pinard, D., van der Merwe, K., Singh, P., van Jaarsveld, I., Silva-Junior, O. B., Togawa, R. C., Pappas, M. R., Faria, D. A., Sansaloni, C. P., Petroli, C. D., Yang, X., Ranjan, P., Tschaplinski, T. J., Ye, C. - Y., Li, T., Sterck, L., Vanneste, K., Murat, F., Soler, M., Clemente, H. S., Saidi, N., Cassan-Wang, H., Dunand, C., Hefer, C. A., Bornberg-Bauer, E., Kersting, A. R., Vining, K., Amarasinghe, V., Ranik, M., Naithani, S., Elser, J., Boyd, A. E., Liston, A., Spatafora, J. W., Dharmwardhana, P., Raja, R., Sullivan, C., Romanel, E., Alves-Ferreira, M., Külheim, C., Foley, W., Carocha, V., Paiva, J., Kudrna, D., Brommonschenkel, S. H., Pasquali, G., Byrne, M., Rigault, P., Tibbits, J., Spokevicius, A., Jones, R. C., Steane, D. A., Vaillancourt, R. E., Potts, B. M., Joubert, F., Barry, K., Pappas, G. J., Strauss, S. H., Jaiswal, P., Grima-Pettenati, J., Salse, J., Van de Peer, Y., Rokhsar, D. S., and Schmutz, J., The genome of Eucalyptus grandis., Nature, vol. 510, no. 7505, pp. 356-62, 2014.
M. K. Monaco, Stein, J., Naithani, S., Wei, S., Dharmawardhana, P., Kumari, S., Amarasinghe, V., Youens-Clark, K., Thomason, J., Preece, J., Pasternak, S., Olson, A., Jiao, Y., Lu, Z., Bolser, D., Kerhornou, A., Staines, D., Walts, B., Wu, G., D'Eustachio, P., Haw, R., Croft, D., Kersey, P. J., Stein, L., Jaiswal, P., and Ware, D., Gramene 2013: comparative plant genomics resources., Nucleic acids research, vol. 42, no. Database issue, pp. D1193-9, 2014.
S. Naithani, Raja, R., Waddell, E. N., Elser, J., Gouthu, S., Deluc, L. G., and Jaiswal, P., VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera)., Frontiers in plant science, vol. 5, p. 644, 2014.
2013
V. Amarasinghe, Dharmawardhana, P. D., and Jaiswal, P., Functional Annotation of Plant Genomes, in Cereal genomics II, P. K. Gupta and Varshney, R. K., Eds. 2013, p. 155.
K. E. Bushley, Raja, R., Jaiswal, P., Cumbie, J. S., Nonogaki, M., Boyd, A. E., Owensby, A. C., Knaus, B. J., Elser, J., Miller, D., Di, Y., McPhail, K. L., and Spatafora, J. W., The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster, PLOS Genetics, vol. 9, no. 6, 2013.
P. Dharmawardhana, Ren, L., Amarasinghe, V., Monaco, M., Thomason, J., Ravenscroft, D., McCouch, S., Ware, D., and Jaiswal, P., A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress, Rice, vol. 6, 2013.
M. K. Monaco, Sen, T. Z., Dharmawardhana, P. D., Ren, L., Schaeffer, M., Naithani, S., Amarasinghe, V., Thomason, J., Harper, L., Gardiner, J., Cannon, E. K. S., Lawrence, C. J., Ware, D., and Jaiswal, P., Maize Metabolic Network Construction and Transcriptome Analysis, The Plant Genome, vol. 6, no. 1, pp. 1-12, 2013.
S. E. Fox, Preece, J., Kimbrel, J. A., Marchini, G. L., Sage, A., Youens-Clark, K., Cruzan, M. B., and Jaiswal, P., SEQUENCING AND DE NOVO TRANSCRIPTOME ASSEMBLY OF BRACHYPODIUM SYLVATICUM (POACEAE ), Applications in Plant Sciences, vol. 1, no. 3, 2013.
M. Hanumappa, Preece, J., Elser, J., Nemeth, D., Bono, G., Wu, K., and Jaiswal, P., WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networks, Rice, vol. 6, 2013.
2011
V. V. Peremyslov, Mockler, T. C., Filichkin, S. A., Fox, S. E., Jaiswal, P., Makarova, K. S., Koonin, E. V., and Dolja, V. V., Expression, splicing, and evolution of the myosin gene family in plants., Plant physiology, vol. 155, no. 3, pp. 1191-204, 2011.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. C., Celton, J. - M., Rees, J. D. G., Williams, K. P., Holt, S. H., Ruiz Rojas, J. J., Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Lopez Girona, E., Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., The genome of woodland strawberry(Fragaria vesca)., Nature genetics, vol. 43, no. 2, pp. 109-16, 2011.
S. A. Filichkin, Breton, G., Priest, H. D., Dharmawardhana, P., Jaiswal, P., Fox, S. E., Michael, T. P., Chory, J., Kay, S. A., and Mockler, T. C., Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules., PloS one, vol. 6, no. 6, p. e16907, 2011.

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