Jaiswal Lab

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Biblio

Found 68 results

2011

P. Jaiswal, “Gramene database: a hub for comparative plant genomics.”, Methods in molecular biology (Clifton, N.J.), vol. 678, pp. 247-75, 2011.

K. Youens-Clark, Buckler, E., Casstevens, T., Chen, C., Declerck, G., Derwent, P., Dharmawardhana, P., Jaiswal, P., Kersey, P., Karthikeyan, A. S., Lu, J., McCouch, S. R., Ren, L., Spooner, W., Stein, J. C., Thomason, J., Wei, S., and Ware, D., “Gramene database in 2010: updates and extensions.”, Nucleic acids research, vol. 39, no. Database issue, pp. D1085-94, 2011.

S. Smita, Lenka, S. K., Katiyar, A., Jaiswal, P., Preece, J., and Bansal, K. C., “QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.”, Database : the journal of biological databases and curation, vol. 2011, p. bar037, 2011.

2010

“The Gene Ontology in 2010: extensions and refinements.”, Nucleic acids research, vol. 38, no. Database issue, pp. D331-5, 2010.

2009

J. Ni, Pujar, A., Youens-Clark, K., Yap, I., Jaiswal, P., Tecle, I., Tung, C. - W., Ren, L., Spooner, W., Wei, X., Avraham, S., Ware, D., Stein, L., and McCouch, S., “Gramene QTL database: development, content and applications.”, Database : the journal of biological databases and curation, vol. 2009, p. bap005, 2009.

2008

R. Bruskiewich, Senger, M., Davenport, G., Ruiz, M., Rouard, M., Hazekamp, T., Takeya, M., Doi, K., Satoh, K., Costa, M., Simon, R., Balaji, J., Akintunde, A., Mauleon, R., Wanchana, S., Shah, T., Anacleto, M., Portugal, A., Ulat, V. J., Thongjuea, S., Braak, K., Ritter, S., Dereeper, A., Skofic, M., Rojas, E., Martins, N., Pappas, G., Alamban, R., Almodiel, R., Barboza, L. H., Detras, J., Manansala, K., Mendoza, M. J., Morales, J., Peralta, B., Valerio, R., Zhang, Y., Gregorio, S., Hermocilla, J., Echavez, M., Yap, J. M., Farmer, A., Schiltz, G., Lee, J., Casstevens, T., Jaiswal, P., Meintjes, A., Wilkinson, M., Good, B., Wagner, J., Morris, J., Marshall, D., Collins, A., Kikuchi, S., Metz, T., McLaren, G., and van Hintum, T., “The generation challenge programme platform: semantic standards and workbench for crop science.”, International journal of plant genomics, vol. 2008, p. 369601, 2008.

C. Liang, Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B., McCouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. - W., Wei, X., Yap, I., Youens-Clark, K., Ware, D., and Stein, L., “Gramene: a growing plant comparative genomics resource.”, Nucleic acids research, vol. 36, no. Database issue, pp. D947-53, 2008.

J. Azevedo, Courtois, F., Hakimi, M. - A., Demarsy, E., Lagrange, T., Alcaraz, J. - P., Jaiswal, P., Maréchal-Drouard, L., and Lerbs-Mache, S., “Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein.”, Proceedings of the National Academy of Sciences of the United States of America, vol. 105, no. 26, pp. 9123-8, 2008.

S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., “The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.”, Nucleic acids research, vol. 36, no. Database issue, pp. D449-54, 2008.

2007

K. Ilic, Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., and Rhee, S. Y., “The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.”, Plant physiology, vol. 143, no. 2, pp. 587-99, 2007.

2006

P. Jaiswal, Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T. M., Buckler, E. S., Stein, L., and McCouch, S., “Gramene: a bird's eye view of cereal genomes.”, Nucleic acids research, vol. 34, no. Database issue, pp. D717-23, 2006.

A. Pujar, Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., Stevens, P., Zapata, F., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Ware, D., and McCouch, S., “Whole-plant growth stage ontology for angiosperms and its application in plant biology.”, Plant physiology, vol. 142, no. 2, pp. 414-28, 2006.

2005

Y. Yamazaki and Jaiswal, P., “Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.”, Plant & cell physiology, vol. 46, no. 1, pp. 63-8, 2005.

P. Jaiswal, Avraham, S., Ilic, K., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Ware, D., and Zapata, F., “Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.”, Comparative and functional genomics, vol. 6, no. 7-8, pp. 388-97, 2005.

2002

D. Ware, Jaiswal, P., Ni, J., Pan, X., Chang, K., Clark, K., Teytelman, L., Schmidt, S., Zhao, W., Cartinhour, S., McCouch, S., and Stein, L., “Gramene: a resource for comparative grass genomics.”, Nucleic acids research, vol. 30, no. 1, pp. 103-5, 2002.

D. H. Ware, Jaiswal, P., Ni, J., Yap, I. V., Pan, X., Clark, K. Y., Teytelman, L., Schmidt, S. C., Zhao, W., Chang, K., Cartinhour, S., Stein, L. D., and McCouch, S. R., “Gramene, a tool for grass genomics.”, Plant physiology, vol. 130, no. 4, pp. 1606-13, 2002.

P. Jaiswal, Ware, D., Ni, J., Chang, K., Zhao, W., Schmidt, S., Pan, X., Clark, K., Teytelman, L., Cartinhour, S., Stein, L., and McCouch, S., “Gramene: development and integration of trait and gene ontologies for rice.”, Comparative and functional genomics, vol. 3, no. 2, pp. 132-6, 2002.

T. A. Beardslee, Roy-Chowdhury, S., Jaiswal, P., Buhot, L., Lerbs-Mache, S., Stern, D. B., and Allison, L. A., “A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.”, The Plant journal : for cell and molecular biology, vol. 31, no. 2, pp. 199-209, 2002.

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