Skip to main content
Jaiswal Lab
Main menu
Home
Projects
Lab Members
Publications
Funding
Lab Blog
Genomics Data
Software
Teaching
Calendar
Jobs/Positions
Contact
User login
Username
*
Password
*
Request new password
You are here
Home
Biblio
Found 68 results
2011
P. Jaiswal
,
“
Gramene database: a hub for comparative plant genomics.
”
,
Methods in molecular biology (Clifton, N.J.)
, vol. 678, pp. 247-75, 2011.
K. Youens-Clark
,
Buckler, E.
,
Casstevens, T.
,
Chen, C.
,
Declerck, G.
,
Derwent, P.
,
Dharmawardhana, P.
,
Jaiswal, P.
,
Kersey, P.
,
Karthikeyan, A. S.
,
Lu, J.
,
McCouch, S. R.
,
Ren, L.
,
Spooner, W.
,
Stein, J. C.
,
Thomason, J.
,
Wei, S.
, and
Ware, D.
,
“
Gramene database in 2010: updates and extensions.
”
,
Nucleic acids research
, vol. 39, no. Database issue, pp. D1085-94, 2011.
S. Smita
,
Lenka, S. K.
,
Katiyar, A.
,
Jaiswal, P.
,
Preece, J.
, and
Bansal, K. C.
,
“
QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.
”
,
Database : the journal of biological databases and curation
, vol. 2011, p. bar037, 2011.
2010
“
The Gene Ontology in 2010: extensions and refinements.
”
,
Nucleic acids research
, vol. 38, no. Database issue, pp. D331-5, 2010.
2009
J. Ni
,
Pujar, A.
,
Youens-Clark, K.
,
Yap, I.
,
Jaiswal, P.
,
Tecle, I.
,
Tung, C. - W.
,
Ren, L.
,
Spooner, W.
,
Wei, X.
,
Avraham, S.
,
Ware, D.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene QTL database: development, content and applications.
”
,
Database : the journal of biological databases and curation
, vol. 2009, p. bap005, 2009.
2008
R. Bruskiewich
,
Senger, M.
,
Davenport, G.
,
Ruiz, M.
,
Rouard, M.
,
Hazekamp, T.
,
Takeya, M.
,
Doi, K.
,
Satoh, K.
,
Costa, M.
,
Simon, R.
,
Balaji, J.
,
Akintunde, A.
,
Mauleon, R.
,
Wanchana, S.
,
Shah, T.
,
Anacleto, M.
,
Portugal, A.
,
Ulat, V. J.
,
Thongjuea, S.
,
Braak, K.
,
Ritter, S.
,
Dereeper, A.
,
Skofic, M.
,
Rojas, E.
,
Martins, N.
,
Pappas, G.
,
Alamban, R.
,
Almodiel, R.
,
Barboza, L. H.
,
Detras, J.
,
Manansala, K.
,
Mendoza, M. J.
,
Morales, J.
,
Peralta, B.
,
Valerio, R.
,
Zhang, Y.
,
Gregorio, S.
,
Hermocilla, J.
,
Echavez, M.
,
Yap, J. M.
,
Farmer, A.
,
Schiltz, G.
,
Lee, J.
,
Casstevens, T.
,
Jaiswal, P.
,
Meintjes, A.
,
Wilkinson, M.
,
Good, B.
,
Wagner, J.
,
Morris, J.
,
Marshall, D.
,
Collins, A.
,
Kikuchi, S.
,
Metz, T.
,
McLaren, G.
, and
van Hintum, T.
,
“
The generation challenge programme platform: semantic standards and workbench for crop science.
”
,
International journal of plant genomics
, vol. 2008, p. 369601, 2008.
C. Liang
,
Jaiswal, P.
,
Hebbard, C.
,
Avraham, S.
,
Buckler, E. S.
,
Casstevens, T.
,
Hurwitz, B.
,
McCouch, S.
,
Ni, J.
,
Pujar, A.
,
Ravenscroft, D.
,
Ren, L.
,
Spooner, W.
,
Tecle, I.
,
Thomason, J.
,
Tung, C. - W.
,
Wei, X.
,
Yap, I.
,
Youens-Clark, K.
,
Ware, D.
, and
Stein, L.
,
“
Gramene: a growing plant comparative genomics resource.
”
,
Nucleic acids research
, vol. 36, no. Database issue, pp. D947-53, 2008.
J. Azevedo
,
Courtois, F.
,
Hakimi, M. - A.
,
Demarsy, E.
,
Lagrange, T.
,
Alcaraz, J. - P.
,
Jaiswal, P.
,
Maréchal-Drouard, L.
, and
Lerbs-Mache, S.
,
“
Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein.
”
,
Proceedings of the National Academy of Sciences of the United States of America
, vol. 105, no. 26, pp. 9123-8, 2008.
S. Avraham
,
Tung, C. - W.
,
Ilic, K.
,
Jaiswal, P.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Zapata, F.
, and
Ware, D.
,
“
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations.
”
,
Nucleic acids research
, vol. 36, no. Database issue, pp. D449-54, 2008.
2007
K. Ilic
,
Kellogg, E. A.
,
Jaiswal, P.
,
Zapata, F.
,
Stevens, P. F.
,
Vincent, L. P.
,
Avraham, S.
,
Reiser, L.
,
Pujar, A.
,
Sachs, M. M.
,
Whitman, N. T.
,
McCouch, S. R.
,
Schaeffer, M. L.
,
Ware, D. H.
,
Stein, L. D.
, and
Rhee, S. Y.
,
“
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.
”
,
Plant physiology
, vol. 143, no. 2, pp. 587-99, 2007.
2006
P. Jaiswal
,
Ni, J.
,
Yap, I.
,
Ware, D.
,
Spooner, W.
,
Youens-Clark, K.
,
Ren, L.
,
Liang, C.
,
Zhao, W.
,
Ratnapu, K.
,
Faga, B.
,
Canaran, P.
,
Fogleman, M.
,
Hebbard, C.
,
Avraham, S.
,
Schmidt, S.
,
Casstevens, T. M.
,
Buckler, E. S.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene: a bird's eye view of cereal genomes.
”
,
Nucleic acids research
, vol. 34, no. Database issue, pp. D717-23, 2006.
A. Pujar
,
Jaiswal, P.
,
Kellogg, E. A.
,
Ilic, K.
,
Vincent, L.
,
Avraham, S.
,
Stevens, P.
,
Zapata, F.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Ware, D.
, and
McCouch, S.
,
“
Whole-plant growth stage ontology for angiosperms and its application in plant biology.
”
,
Plant physiology
, vol. 142, no. 2, pp. 414-28, 2006.
2005
Y. Yamazaki
and
Jaiswal, P.
,
“
Biological ontologies in rice databases. An introduction to the activities in Gramene and Oryzabase.
”
,
Plant & cell physiology
, vol. 46, no. 1, pp. 63-8, 2005.
P. Jaiswal
,
Avraham, S.
,
Ilic, K.
,
Kellogg, E. A.
,
McCouch, S.
,
Pujar, A.
,
Reiser, L.
,
Rhee, S. Y.
,
Sachs, M. M.
,
Schaeffer, M.
,
Stein, L.
,
Stevens, P.
,
Vincent, L.
,
Ware, D.
, and
Zapata, F.
,
“
Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.
”
,
Comparative and functional genomics
, vol. 6, no. 7-8, pp. 388-97, 2005.
2002
D. Ware
,
Jaiswal, P.
,
Ni, J.
,
Pan, X.
,
Chang, K.
,
Clark, K.
,
Teytelman, L.
,
Schmidt, S.
,
Zhao, W.
,
Cartinhour, S.
,
McCouch, S.
, and
Stein, L.
,
“
Gramene: a resource for comparative grass genomics.
”
,
Nucleic acids research
, vol. 30, no. 1, pp. 103-5, 2002.
D. H. Ware
,
Jaiswal, P.
,
Ni, J.
,
Yap, I. V.
,
Pan, X.
,
Clark, K. Y.
,
Teytelman, L.
,
Schmidt, S. C.
,
Zhao, W.
,
Chang, K.
,
Cartinhour, S.
,
Stein, L. D.
, and
McCouch, S. R.
,
“
Gramene, a tool for grass genomics.
”
,
Plant physiology
, vol. 130, no. 4, pp. 1606-13, 2002.
P. Jaiswal
,
Ware, D.
,
Ni, J.
,
Chang, K.
,
Zhao, W.
,
Schmidt, S.
,
Pan, X.
,
Clark, K.
,
Teytelman, L.
,
Cartinhour, S.
,
Stein, L.
, and
McCouch, S.
,
“
Gramene: development and integration of trait and gene ontologies for rice.
”
,
Comparative and functional genomics
, vol. 3, no. 2, pp. 132-6, 2002.
T. A. Beardslee
,
Roy-Chowdhury, S.
,
Jaiswal, P.
,
Buhot, L.
,
Lerbs-Mache, S.
,
Stern, D. B.
, and
Allison, L. A.
,
“
A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.
”
,
The Plant journal : for cell and molecular biology
, vol. 31, no. 2, pp. 199-209, 2002.
Pages
« first
‹ previous
1
2
3
Major Grants
Recent blog posts
Jaiswal Lab receives its first space biology funding from NASA to study plant transcriptomes.
Jaiswal Lab member Dr. Parul Gupta recognized by NASA Genelab AWG
2016 STEM Summer Camp on DNA Biology and Bioinformatics
NSF Funds Development of Common Reference Ontologies and Applications for Plant Biology
Job posting: Software and Database developer
Job posting: Plant Pathway and Gene Network curator position at Postdoc scholar level
Job posting: Postdoctoral Scholar Position Available- Biocuration and Ontology Development for Plant Genomics and Phenomics
High School Students Genotype Einkorn Wheat Varieties in DNA Biology Summer Camp at Oregon State University
Genome could unlock eucalyptus potential for paper, fuel and fiber
Triticum monococcum (Einkorn wheat) Transcriptome Assembly and Light Regulated Gene Expression Analyses.
More