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FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.

TitleFragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.
Publication TypeJournal Article
Year of Publication2016
AuthorsNaithani, S, Partipilo CM, Raja R, Elser JL, Jaiswal P
JournalFrontiers in plant science
Volume7
Pagination242
Date Published2016
ISSN1664-462X
Abstract

FragariaCyc is a strawberry-specific cellular metabolic network based on the annotated genome sequence of Fragaria vesca L. ssp. vesca, accession Hawaii 4. It was built on the Pathway-Tools platform using MetaCyc as the reference. The experimental evidences from published literature were used for supporting/editing existing entities and for the addition of new pathways, enzymes, reactions, compounds, and small molecules in the database. To date, FragariaCyc comprises 66 super-pathways, 488 unique pathways, 2348 metabolic reactions, 3507 enzymes, and 2134 compounds. In addition to searching and browsing FragariaCyc, researchers can compare pathways across various plant metabolic networks and analyze their data using Omics Viewer tool. We view FragariaCyc as a resource for the community of researchers working with strawberry and related fruit crops. It can help understanding the regulation of overall metabolism of strawberry plant during development and in response to diseases and abiotic stresses. FragariaCyc is available online at http://pathways.cgrb.oregonstate.edu.

URLhttps://doi.org/10.3389/fpls.2016.00242
DOI10.3389/fpls.2016.00242
Alternate JournalFront Plant Sci
Refereed DesignationRefereed