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Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.

TitlePlant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages.
Publication TypeJournal Article
Year of Publication2005
AuthorsJaiswal, P, Avraham S, Ilic K, Kellogg EA, McCouch S, Pujar A, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Stevens P, Vincent L, Ware D, Zapata F
JournalComparative and functional genomics
Volume6
Issue7-8
Pagination388-97
Date Published2005
ISSN1531-6912
Abstract

The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany and genomics. A primary goal of the POC is to develop simple yet robust and extensible controlled vocabularies that accurately reflect the biology of plant structures and developmental stages. These provide a network of vocabularies linked by relationships (ontology) to facilitate queries that cut across datasets within a database or between multiple databases. The current version of the ontology integrates diverse vocabularies used to describe Arabidopsis, maize and rice (Oryza sp.) anatomy, morphology and growth stages. Using the ontology browser, over 3500 gene annotations from three species-specific databases, The Arabidopsis Information Resource (TAIR) for Arabidopsis, Gramene for rice and MaizeGDB for maize, can now be queried and retrieved.

Alternate JournalComp. Funct. Genomics