@article{15, keywords = {Transcription, Genetic, Terminal Repeat Sequences, Phylogeny, Models, Genetic, Likelihood Functions, In Situ Hybridization, Fluorescence, Genome, Plant, Genetic Linkage, Genes, Plant, Gene Expression Profiling, Fragaria, Chromosome Mapping, Chloroplasts, Algorithms}, author = {Vladimir Shulaev and Daniel Sargent and Ross Crowhurst and Todd Mockler and Otto Folkerts and Arthur Delcher and Pankaj Jaiswal and Keithanne Mockaitis and Aaron Liston and Shrinivasrao Mane and Paul Burns and Thomas Davis and Janet Slovin and Nahla Bassil and Roger Hellens and Clive Evans and Tim Harkins and Chinnappa Kodira and Brian Desany and Oswald Crasta and Roderick Jensen V and Andrew Allan and Todd Michael and Joao Setubal and Jean-Marc Celton and Jasper Rees and Kelly Williams and Sarah Holt and Juan Rojas and Mithu Chatterjee and Bo Liu and Herman Silva and Lee Meisel and Avital Adato and Sergei Filichkin and Michela Troggio and Roberto Viola and Tia-Lynn Ashman and Hao Wang and Palitha Dharmawardhana and Justin Elser and Rajani Raja and Henry Priest and Douglas Bryant and Samuel Fox and Scott Givan and Larry Wilhelm and Sushma Naithani and Alan Christoffels and David Salama and Jade Carter and Elena Girona and Anna Zdepski and Wenqin Wang and Randall Kerstetter and Wilfried Schwab and Schuyler Korban and Jahn Davik and Amparo Monfort and Beatrice Denoyes-Rothan and Pere Arus and Ron Mittler and Barry Flinn and Asaph Aharoni and Jeffrey Bennetzen and Steven Salzberg and Allan Dickerman and Riccardo Velasco and Mark Borodovsky and Richard Veilleux and Kevin Folta}, title = {The genome of woodland strawberry(Fragaria vesca).}, abstract = {The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria × ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.}, year = {2011}, journal = {Nature genetics}, volume = {43}, pages = {109-16}, month = {2011 Feb}, issn = {1546-1718}, language = {eng}, }