@article{20, keywords = {Chromosome Mapping, Databases, Genetic, Genes, Plant, Genetic Variation, Genome, Plant, Genomics, Metabolic Networks and Pathways, Plants, Quantitative Trait Loci, Synteny}, author = {Ken Youens-Clark and Ed Buckler and Terry Casstevens and Charles Chen and Genevieve Declerck and Paul Derwent and Palitha Dharmawardhana and Pankaj Jaiswal and Paul Kersey and A Karthikeyan and Jerry Lu and Susan McCouch and Liya Ren and William Spooner and Joshua Stein and Jim Thomason and Sharon Wei and Doreen Ware}, title = {Gramene database in 2010: updates and extensions.}, abstract = {Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data.}, year = {2011}, journal = {Nucleic acids research}, volume = {39}, pages = {D1085-94}, month = {2011 Jan}, issn = {1362-4962}, language = {eng}, }