@article{73,
  keywords = {Animals, Computational Biology, Databases, Genetic, Genome, Bacterial, Genome, Fungal, Genome, Plant, Genomics, Internet, Plants, Software, Vertebrates},
  author = {Andrew Yates and James Allen and Ridwan Amode and Andrey Azov and Matthieu Barba and Andrés Becerra and Jyothish Bhai and Lahcen Campbell and Manuel Martinez and Marc Chakiachvili and Kapeel Chougule and Mikkel Christensen and Bruno Contreras-Moreira and Alayne Cuzick and Luca Fioretto and Paul Davis and Nishadi De Silva and Stavros Diamantakis and Sarah Dyer and Justin Elser and Carla Filippi V and Astrid Gall and Dionysios Grigoriadis and Cristina Guijarro-Clarke and Parul Gupta and Kim Hammond-Kosack and Kevin Howe and Pankaj Jaiswal and Vinay Kaikala and Vivek Kumar and Sunita Kumari and Nick Langridge and Tuan Le and Manuel Luypaert and Gareth Maslen and Thomas Maurel and Benjamin Moore and Matthieu Muffato and Aleena Mushtaq and Guy Naamati and Sushma Naithani and Andrew Olson and Anne Parker and Michael Paulini and Helder Pedro and Emily Perry and Justin Preece and Mark Quinton-Tulloch and Faye Rodgers and Marc Rosello and Magali Ruffier and James Seager and Vasily Sitnik and Michal Szpak and John Tate and Marcela Tello-Ruiz and Stephen Trevanion and Martin Urban and Doreen Ware and Sharon Wei and Gary Williams and Andrea Winterbottom and Magdalena Zarowiecki and Robert Finn and Paul Flicek},
  title = {Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.},
  abstract = {<p>Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensembl.org). The two resources collectively present genome annotation through a consistent set of interfaces spanning the tree of life presenting genome sequence, annotation, variation, transcriptomic data and comparative analysis. Here, we present our largest increase in plant, metazoan and fungal genomes since the project's inception creating one of the world's most comprehensive genomic resources and describe our efforts to reduce genome redundancy in our Bacteria portal. We detail our new efforts in gene annotation, our emerging support for pangenome analysis, our efforts to accelerate data dissemination through the Ensembl Rapid Release resource and our new AlphaFold visualization. Finally, we present details of our future plans including updates on our integration with Ensembl, and how we plan to improve our support for the microbial research community. Software and data are made available without restriction via our website, online tools platform and programmatic interfaces (available under an Apache 2.0 license). Data updates are synchronised with Ensembl's release cycle.</p>
},
  year = {2022},
  journal = {Nucleic Acids Res},
  volume = {50},
  pages = {D996-D1003},
  month = {2022 Jan 07},
  issn = {1362-4962},
  doi = {10.1093/nar/gkab1007},
  language = {eng},
}