04047nas a2201153   4500000000100000000000100001008004100002260001300043653002700056653003000083653001400113653002000127653002500147653004000172653001800212653002000230653001700250653003000267653001300297653002300310653001700333653001500350100002100365700001900386700001900405700001700424700001800441700001900459700001900478700002400497700001700521700002200538700001500560700001700575700001700592700001700609700001800626700001600644700001600660700002100676700001700697700001800714700002200732700001700754700001700771700001700788700002100805700001600826700001900842700001500861700001500876700002100891700001100912700001700923700001500940700001700955700002100972700002000993700001801013700002001031700001301051700002701064700001701091700001601108700001701124700001901141700001501160700001601175700001801191700002001209700002201229700001701251700001601268700001701284700001701301700001601318700002301334700002001357700002001377700001501397700001901412700002801431700001401459700001601473700001601489700001801505700002201523700002001545700002001565700002101585700002001606700002101626700001601647245005501663300001101718490000701729520114301736022001402879       2011                            d  c2011 Feb10aTranscription, Genetic10aTerminal Repeat Sequences10aPhylogeny10aModels, Genetic10aLikelihood Functions10aIn Situ Hybridization, Fluorescence10aGenome, Plant10aGenetic Linkage10aGenes, Plant10aGene Expression Profiling10aFragaria10aChromosome Mapping10aChloroplasts10aAlgorithms1 aVladimir Shulaev1 aDaniel Sargent1 aRoss Crowhurst1 aTodd Mockler1 aOtto Folkerts1 aArthur Delcher1 aPankaj Jaiswal1 aKeithanne Mockaitis1 aAaron Liston1 aShrinivasrao Mane1 aPaul Burns1 aThomas Davis1 aJanet Slovin1 aNahla Bassil1 aRoger Hellens1 aClive Evans1 aTim Harkins1 aChinnappa Kodira1 aBrian Desany1 aOswald Crasta1 aRoderick Jensen V1 aAndrew Allan1 aTodd Michael1 aJoao Setubal1 aJean-Marc Celton1 aJasper Rees1 aKelly Williams1 aSarah Holt1 aJuan Rojas1 aMithu Chatterjee1 aBo Liu1 aHerman Silva1 aLee Meisel1 aAvital Adato1 aSergei Filichkin1 aMichela Troggio1 aRoberto Viola1 aTia-Lynn Ashman1 aHao Wang1 aPalitha Dharmawardhana1 aJustin Elser1 aRajani Raja1 aHenry Priest1 aDouglas Bryant1 aSamuel Fox1 aScott Givan1 aLarry Wilhelm1 aSushma Naithani1 aAlan Christoffels1 aDavid Salama1 aJade Carter1 aElena Girona1 aAnna Zdepski1 aWenqin Wang1 aRandall Kerstetter1 aWilfried Schwab1 aSchuyler Korban1 aJahn Davik1 aAmparo Monfort1 aBeatrice Denoyes-Rothan1 aPere Arus1 aRon Mittler1 aBarry Flinn1 aAsaph Aharoni1 aJeffrey Bennetzen1 aSteven Salzberg1 aAllan Dickerman1 aRiccardo Velasco1 aMark Borodovsky1 aRichard Veilleux1 aKevin Folta00aThe genome of woodland strawberry(Fragaria vesca).  a109-160 v433 aThe woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria × ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.  a1546-1718