TY - JOUR
KW - Transcription, Genetic
KW - Terminal Repeat Sequences
KW - Phylogeny
KW - Models, Genetic
KW - Likelihood Functions
KW - In Situ Hybridization, Fluorescence
KW - Genome, Plant
KW - Genetic Linkage
KW - Genes, Plant
KW - Gene Expression Profiling
KW - Fragaria
KW - Chromosome Mapping
KW - Chloroplasts
KW - Algorithms
AU - Vladimir Shulaev
AU - Daniel Sargent
AU - Ross Crowhurst
AU - Todd Mockler
AU - Otto Folkerts
AU - Arthur Delcher
AU - Pankaj Jaiswal
AU - Keithanne Mockaitis
AU - Aaron Liston
AU - Shrinivasrao Mane
AU - Paul Burns
AU - Thomas Davis
AU - Janet Slovin
AU - Nahla Bassil
AU - Roger Hellens
AU - Clive Evans
AU - Tim Harkins
AU - Chinnappa Kodira
AU - Brian Desany
AU - Oswald Crasta
AU - Roderick Jensen V
AU - Andrew Allan
AU - Todd Michael
AU - Joao Setubal
AU - Jean-Marc Celton
AU - Jasper Rees
AU - Kelly Williams
AU - Sarah Holt
AU - Juan Rojas
AU - Mithu Chatterjee
AU - Bo Liu
AU - Herman Silva
AU - Lee Meisel
AU - Avital Adato
AU - Sergei Filichkin
AU - Michela Troggio
AU - Roberto Viola
AU - Tia-Lynn Ashman
AU - Hao Wang
AU - Palitha Dharmawardhana
AU - Justin Elser
AU - Rajani Raja
AU - Henry Priest
AU - Douglas Bryant
AU - Samuel Fox
AU - Scott Givan
AU - Larry Wilhelm
AU - Sushma Naithani
AU - Alan Christoffels
AU - David Salama
AU - Jade Carter
AU - Elena Girona
AU - Anna Zdepski
AU - Wenqin Wang
AU - Randall Kerstetter
AU - Wilfried Schwab
AU - Schuyler Korban
AU - Jahn Davik
AU - Amparo Monfort
AU - Beatrice Denoyes-Rothan
AU - Pere Arus
AU - Ron Mittler
AU - Barry Flinn
AU - Asaph Aharoni
AU - Jeffrey Bennetzen
AU - Steven Salzberg
AU - Allan Dickerman
AU - Riccardo Velasco
AU - Mark Borodovsky
AU - Richard Veilleux
AU - Kevin Folta
AB - The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria × ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.
BT - Nature genetics
C1 - http://www.ncbi.nlm.nih.gov/pubmed/21186353?dopt=Abstract
DA - 2011 Feb
IS - 2
J2 - Nat. Genet.
LA - eng
N2 - The woodland strawberry, Fragaria vesca (2n = 2x = 14), is a versatile experimental plant system. This diminutive herbaceous perennial has a small genome (240 Mb), is amenable to genetic transformation and shares substantial sequence identity with the cultivated strawberry (Fragaria × ananassa) and other economically important rosaceous plants. Here we report the draft F. vesca genome, which was sequenced to ×39 coverage using second-generation technology, assembled de novo and then anchored to the genetic linkage map into seven pseudochromosomes. This diploid strawberry sequence lacks the large genome duplications seen in other rosids. Gene prediction modeling identified 34,809 genes, with most being supported by transcriptome mapping. Genes critical to valuable horticultural traits including flavor, nutritional value and flowering time were identified. Macrosyntenic relationships between Fragaria and Prunus predict a hypothetical ancestral Rosaceae genome that had nine chromosomes. New phylogenetic analysis of 154 protein-coding genes suggests that assignment of Populus to Malvidae, rather than Fabidae, is warranted.
PY - 2011
SP - 109
EP - 16
T2 - Nature genetics
TI - The genome of woodland strawberry(Fragaria vesca).
VL - 43
SN - 1546-1718
ER -