TY - JOUR
KW - Chromosome Mapping
KW - Databases, Genetic
KW - Genes, Plant
KW - Genetic Variation
KW - Genome, Plant
KW - Genomics
KW - Metabolic Networks and Pathways
KW - Plants
KW - Quantitative Trait Loci
KW - Synteny
AU - Ken Youens-Clark
AU - Ed Buckler
AU - Terry Casstevens
AU - Charles Chen
AU - Genevieve Declerck
AU - Paul Derwent
AU - Palitha Dharmawardhana
AU - Pankaj Jaiswal
AU - Paul Kersey
AU - A Karthikeyan
AU - Jerry Lu
AU - Susan McCouch
AU - Liya Ren
AU - William Spooner
AU - Joshua Stein
AU - Jim Thomason
AU - Sharon Wei
AU - Doreen Ware
AB - Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data.
BT - Nucleic acids research
C1 - http://www.ncbi.nlm.nih.gov/pubmed/21076153?dopt=Abstract
DA - 2011 Jan
IS - Database issue
J2 - Nucleic Acids Res.
LA - eng
N2 - Now in its 10th year, the Gramene database (http://www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for major model and crop plants including Arabidopsis, Brachypodium, maize, sorghum, poplar and grape in addition to several species of rice. Gramene began with the addition of an Ensembl genome browser and has expanded in the last decade to become a robust resource for plant genomics hosting a wide array of data sets including quantitative trait loci (QTL), metabolic pathways, genetic diversity, genes, proteins, germplasm, literature, ontologies and a fully-structured markers and sequences database integrated with genome browsers and maps from various published studies (genetic, physical, bin, etc.). In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data.
PY - 2011
SP - D1085
EP - 94
T2 - Nucleic acids research
TI - Gramene database in 2010: updates and extensions.
VL - 39
SN - 1362-4962
ER -