TY - JOUR
KW - Database Management Systems
KW - Databases, Genetic
KW - Genome, Plant
KW - Genomics
KW - Internet
KW - Oryza sativa
KW - Plant Proteins
KW - Quantitative Trait Loci
KW - Stress, Physiological
KW - User-Computer Interface
AU - Shuchi Smita
AU - Sangram Lenka
AU - Amit Katiyar
AU - Pankaj Jaiswal
AU - Justin Preece
AU - Kailash Bansal
AB - The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome. Information on QTLs related to abiotic stresses and their corresponding loci from a genomic perspective has not yet been integrated on an accessible, user-friendly platform. QlicRice offers client-responsive architecture to retrieve meaningful biological information--integrated and named 'Qlic Search'--embedded in a query phrase autocomplete feature, coupled with multiple search options that include trait names, genes and QTL IDs. A comprehensive physical and genetic map and vital statistics have been provided in a graphical manner for deciphering the position of QTLs on different chromosomes. A convenient and intuitive user interface have been designed to help users retrieve associations to agronomically important QTLs on abiotic stress response in rice. Database URL: http://nabg.iasri.res.in:8080/qlic-rice/.
BT - Database : the journal of biological databases and curation
C1 - http://www.ncbi.nlm.nih.gov/pubmed/21965557?dopt=Abstract
DA - 2011
DO - 10.1093/database/bar037
J2 - Database (Oxford)
LA - eng
N2 - The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome. Information on QTLs related to abiotic stresses and their corresponding loci from a genomic perspective has not yet been integrated on an accessible, user-friendly platform. QlicRice offers client-responsive architecture to retrieve meaningful biological information--integrated and named 'Qlic Search'--embedded in a query phrase autocomplete feature, coupled with multiple search options that include trait names, genes and QTL IDs. A comprehensive physical and genetic map and vital statistics have been provided in a graphical manner for deciphering the position of QTLs on different chromosomes. A convenient and intuitive user interface have been designed to help users retrieve associations to agronomically important QTLs on abiotic stress response in rice. Database URL: http://nabg.iasri.res.in:8080/qlic-rice/.
PY - 2011
EP - bar037
T2 - Database : the journal of biological databases and curation
TI - QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice.
VL - 2011
SN - 1758-0463
ER -