TY - JOUR
AU - Parul Gupta
AU - Sushma Naithani
AU - Marcela Tello-Ruiz
AU - Kapeel Chougule
AU - Peter D'Eustachio
AU - Antonio Fabregat
AU - Yinping Jiao
AU - Maria Keays
AU - Young Lee
AU - Sunita Kumari
AU - Joseph Mulvaney
AU - Andrew Olson
AU - Justin Preece
AU - Joshua Stein
AU - Sharon Wei
AU - Joel Weiser
AU - Laura Huerta
AU - Robert Petryszak
AU - Paul Kersey
AU - Lincoln Stein
AU - Doreen Ware
AU - Pankaj Jaiswal
AB - Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and metabolic engineering. It exploits phylogenetic relationships to enrich the annotation of genomic data and provides tools to perform powerful comparative analyses across a wide spectrum of plant species. It consists of an integrated portal for querying, visualizing and analyzing data for 44 plant reference genomes, genetic variation data sets for 12 species, expression data for 16 species, curated rice pathways and orthology-based pathway projections for 66 plant species including various crops. Here we briefly describe the functions and uses of the Gramene database.
BT - Current plant biology
C1 - http://www.ncbi.nlm.nih.gov/pubmed/28713666?dopt=Abstract
DA - 2016 Nov
DO - 10.1016/j.cpb.2016.12.005
J2 - Curr Plant Biol
LA - eng
N2 - Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and metabolic engineering. It exploits phylogenetic relationships to enrich the annotation of genomic data and provides tools to perform powerful comparative analyses across a wide spectrum of plant species. It consists of an integrated portal for querying, visualizing and analyzing data for 44 plant reference genomes, genetic variation data sets for 12 species, expression data for 16 species, curated rice pathways and orthology-based pathway projections for 66 plant species including various crops. Here we briefly describe the functions and uses of the Gramene database.
PY - 2016
SP - 10
EP - 15
T2 - Current plant biology
TI - Gramene Database: Navigating Plant Comparative Genomics Resources.
VL - 7-8
SN - 2214-6628
ER -