TY - JOUR
AU - Kevin Howe
AU - Bruno Contreras-Moreira
AU - Nishadi De Silva
AU - Gareth Maslen
AU - Wasiu Akanni
AU - James Allen
AU - Jorge Alvarez-Jarreta
AU - Matthieu Barba
AU - Dan Bolser
AU - Lahcen Cambell
AU - Manuel Carbajo
AU - Marc Chakiachvili
AU - Mikkel Christensen
AU - Carla Cummins
AU - Alayne Cuzick
AU - Paul Davis
AU - Silvie Fexova
AU - Astrid Gall
AU - Nancy George
AU - Laurent Gil
AU - Parul Gupta
AU - Kim Hammond-Kosack
AU - Erin Haskell
AU - Sarah Hunt
AU - Pankaj Jaiswal
AU - Sophie Janacek
AU - Paul Kersey
AU - Nick Langridge
AU - Uma Maheswari
AU - Thomas Maurel
AU - Mark McDowall
AU - Ben Moore
AU - Matthieu Muffato
AU - Guy Naamati
AU - Sushma Naithani
AU - Andrew Olson
AU - Irene Papatheodorou
AU - Mateus Patricio
AU - Michael Paulini
AU - Helder Pedro
AU - Emily Perry
AU - Justin Preece
AU - Marc Rosello
AU - Matthew Russell
AU - Vasily Sitnik
AU - Daniel Staines
AU - Joshua Stein
AU - Marcela Tello-Ruiz
AU - Stephen Trevanion
AU - Martin Urban
AU - Sharon Wei
AU - Doreen Ware
AU - Gary Williams
AU - Andrew Yates
AU - Paul Flicek
AB - Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent set of interfaces to genomic data across the tree of life, including reference genome sequence, gene models, transcriptional data, genetic variation and comparative analysis. Data may be accessed via our website, online tools platform and programmatic interfaces, with updates made four times per year (in synchrony with Ensembl). Here, we provide an overview of Ensembl Genomes, with a focus on recent developments. These include the continued growth, more robust and reproducible sets of orthologues and paralogues, and enriched views of gene expression and gene function in plants. Finally, we report on our continued deeper integration with the Ensembl project, which forms a key part of our future strategy for dealing with the increasing quantity of available genome-scale data across the tree of life.
BT - Nucleic acids research
C1 - http://www.ncbi.nlm.nih.gov/pubmed/31598706?dopt=Abstract
DA - 2019 Oct 10
DO - 10.1093/nar/gkz890
J2 - Nucleic Acids Res.
LA - eng
N2 - Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the two resources provide a consistent set of interfaces to genomic data across the tree of life, including reference genome sequence, gene models, transcriptional data, genetic variation and comparative analysis. Data may be accessed via our website, online tools platform and programmatic interfaces, with updates made four times per year (in synchrony with Ensembl). Here, we provide an overview of Ensembl Genomes, with a focus on recent developments. These include the continued growth, more robust and reproducible sets of orthologues and paralogues, and enriched views of gene expression and gene function in plants. Finally, we report on our continued deeper integration with the Ensembl project, which forms a key part of our future strategy for dealing with the increasing quantity of available genome-scale data across the tree of life.
PY - 2019
T2 - Nucleic acids research
TI - Ensembl Genomes 2020-enabling non-vertebrate genomic research.
SN - 1362-4962
ER -