TY - JOUR
KW - Crops, Agricultural
KW - Data Curation
KW - Databases, Genetic
KW - Gene Expression Regulation, Plant
KW - Gene Ontology
KW - Genome, Plant
KW - Molecular Sequence Annotation
KW - Phenotype
KW - Plants
KW - Software
KW - User-Computer Interface
AU - Laurel Cooper
AU - Austin Meier
AU - Marie-Angélique Laporte
AU - Justin Elser
AU - Chris Mungall
AU - Brandon Sinn
AU - Dario Cavaliere
AU - Seth Carbon
AU - Nathan Dunn
AU - Barry Smith
AU - Botong Qu
AU - Justin Preece
AU - Eugene Zhang
AU - Sinisa Todorovic
AU - Georgios Gkoutos
AU - John Doonan
AU - Dennis Stevenson
AU - Elizabeth Arnaud
AU - Pankaj Jaiswal
AB - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository.
BT - Nucleic acids research
C1 - http://www.ncbi.nlm.nih.gov/pubmed/29186578?dopt=Abstract
DA - 2018 01 04
DO - 10.1093/nar/gkx1152
IS - D1
J2 - Nucleic Acids Res.
LA - eng
N2 - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository.
PY - 2018
SP - D1168
EP - D1180
T2 - Nucleic acids research
TI - The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
VL - 46
SN - 1362-4962
ER -