Ware, D. H., Jaiswal, P., Ni, J., Yap, I. , V, Pan, X., Clark, K. Y., … McCouch, S. R. (2002). Gramene, a tool for grass genomics. Plant Physiology, 130(4), 1606-13. (Original work published 2002)
Naithani, S., & Jaiswal, P. (2017). Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study. Methods in Molecular Biology (Clifton, N.J.), 1533, 241-256. https://doi.org/10.1007/978-1-4939-6658-5_14 (Original work published 2017)
Cooper, L., Meier, A., Laporte, M.-A., Elser, J. L., Mungall, C., Sinn, B. T., … Jaiswal, P. (2018). The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research, 46(D1), D1168-D1180. https://doi.org/10.1093/nar/gkx1152 (Original work published)
Tello-Ruiz, M. K., Jaiswal, P., & Ware, D. (2022). Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. Methods Mol Biol, 2443, 101-131. https://doi.org/10.1007/978-1-0716-2067-0_5 (Original work published 2022)
Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., … Flicek, P. (2022). Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res, 50(D1), D996-D1003. https://doi.org/10.1093/nar/gkab1007 (Original work published)
Padgitt-Cobb, L. K., Kingan, S. B., Wells, J., Elser, J., Kronmiller, B., Moore, D., … Hendrix, D. A. (2021). A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome. Plant Genome, 14(1), e20072. https://doi.org/10.1002/tpg2.20072 (Original work published 2021)
Tello-Ruiz, M. K., Naithani, S., Gupta, P., Olson, A., Wei, S., Preece, J., … Ware, D. (2021). Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res, 49(D1), D1452-D1463. https://doi.org/10.1093/nar/gkaa979 (Original work published)
Avraham, S., Tung, C.-W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., … Ware, D. (2008). The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research, 36(Database issue), D449-54. (Original work published 2008)
Liang, C., Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., … Stein, L. (2008). Gramene: a growing plant comparative genomics resource. Nucleic Acids Research, 36(Database issue), D947-53. (Original work published 2008)
Jaiswal, P., Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., … McCouch, S. (2006). Gramene: a bird’s eye view of cereal genomes. Nucleic Acids Research, 34(Database issue), D717-23. (Original work published)