Tello-Ruiz, M. K., Naithani, S., Gupta, P., Olson, A., Wei, S., Preece, J., … Ware, D. (2021). Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res, 49(D1), D1452-D1463. https://doi.org/10.1093/nar/gkaa979 (Original work published)
Pujar, A., Jaiswal, P., Kellogg, E. A., Ilic, K., Vincent, L., Avraham, S., … McCouch, S. (2006). Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology, 142(2), 414-28. (Original work published 2006)
Consortium, G. O. (2010). The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Research, 38(Database issue), D331-5. (Original work published 2010)
Naithani, S., Geniza, M., & Jaiswal, P. (2017). Variant Effect Prediction Analysis Using Resources Available at Gramene Database. Methods in Molecular Biology (Clifton, N.J.), 1533, 279-297. https://doi.org/10.1007/978-1-4939-6658-5_17 (Original work published 2017)
Naithani, S., & Jaiswal, P. (2017). Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study. Methods in Molecular Biology (Clifton, N.J.), 1533, 241-256. https://doi.org/10.1007/978-1-4939-6658-5_14 (Original work published 2017)
Cooper, L., Meier, A., Laporte, M.-A., Elser, J. L., Mungall, C., Sinn, B. T., … Jaiswal, P. (2018). The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research, 46(D1), D1168-D1180. https://doi.org/10.1093/nar/gkx1152 (Original work published)
Yates, A. D., Allen, J., Amode, R. M., Azov, A. G., Barba, M., Becerra, A., … Flicek, P. (2022). Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res, 50(D1), D996-D1003. https://doi.org/10.1093/nar/gkab1007 (Original work published)