Justin Elser

Consortium, G. O., Aleksander, S., Balhoff, J., Carbon, S., Cherry, M., Drabkin, H., … Westerfield, M. (2023). The Gene Ontology knowledgebase in 2023. Genetics, 224(1). https://doi.org/10.1093/genetics/iyad031 (Original work published 2023)

Naithani, S., Mohanty, B., Elser, J., D’Eustachio, P., & Jaiswal, P. (2023). Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (). Plants (Basel, Switzerland), 12(11). https://doi.org/10.3390/plants12112146 (Original work published 2023)

Gupta, P., Elser, J., Hooks, E., D’Eustachio, P., Jaiswal, P., & Naithani, S. (2024). Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis. Nucleic Acids Research, 52(D1), D1538-D1547. https://doi.org/10.1093/nar/gkad1052 (Original work published 2024)

Cooper, L., Elser, J., Laporte, M.-A., Arnaud, E., & Jaiswal, P. (2024). Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology. Nucleic Acids Research, 52(D1), D1548-D1555. https://doi.org/10.1093/nar/gkad1028 (Original work published 2024)

Contreras-Moreira, B., Sharma, E., Saraf, S., Naamati, G., Gupta, P., Elser, J., … Jones, A. (2025). A pan-gene catalogue of Asian cultivated rice. BioRxiv : The Preprint Server for Biology. https://doi.org/10.1101/2025.02.17.638606 (Original work published 2025)

Quandt, A., Di, Y., Elser, J., Jaiswal, P., & Spatafora, J. W. (2016). Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides. G3 (Bethesda, Md.), 6(3), 731-41. https://doi.org/10.1534/g3.116.027045 (Original work published)

Tello-Ruiz, M. K., Naithani, S., Stein, J. C., Gupta, P., Campbell, M., Olson, A., … Ware, D. (2018). Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Research, 46(D1), D1181-D1189. https://doi.org/10.1093/nar/gkx1111 (Original work published)

Qu, B., Kumar, P., Zhang, E., Jaiswal, P., Cooper, L., Elser, J., & Zhang, Y. (2017). Interactive Design and Visualization of N-ary Relationships. SIGGRAPH Asia 2017 Symposium on Visualization, 15:1–15:8. New York, NY, USA: ACM. https://doi.org/10.1145/3139295.3139314

Walls, R. L., Cooper, L., Elser, J., Gandolfo, M. A., Mungall, C. J., Smith, B., … Jaiswal, P. (2019). The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. Frontiers in Plant Science, 10, 631. https://doi.org/10.3389/fpls.2019.00631 (Original work published 2019)

Gupta, P., Naithani, S., Preece, J., Kim, S., Cheng, T., D’Eustachio, P., … Jaiswal, P. (2022). Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. Methods Mol Biol, 2443, 511-525. https://doi.org/10.1007/978-1-0716-2067-0_27 (Original work published 2022)